fix: repair script paths after reorg

scripts/bash/configure-server.sh

@@ -3,8 +3,9 @@
 
 set -euo pipefail
 
-SCRIPT_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)"
+SCRIPT_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}" )" && pwd)"
-PROJECT_DIR="$(dirname "$SCRIPT_DIR")"
+PROJECT_DIR="$(cd "$SCRIPT_DIR/../.." && pwd)"
+APPLY_SCRIPT="$PROJECT_DIR/scripts/python/apply-config.py"
 
 # Colors for output
 GREEN='\033[0;32m'
@@ -70,7 +71,7 @@ EOF
     echo -e "\n${YELLOW}Would you like to apply these changes now? (y/N)${NC}"
     read -r response
     if [[ "$response" =~ ^[Yy]$ ]]; then
-        python3 "$SCRIPT_DIR/apply-config.py"
+        python3 "$APPLY_SCRIPT"
     else
         echo -e "${BLUE}ℹ️  Run '$(basename "$0") apply' when ready to apply changes${NC}"
     fi
@@ -114,7 +115,7 @@ show_status() {
 
     # Show available presets
     echo -e "\n${BLUE}📋 Available Presets:${NC}"
-    python3 "$SCRIPT_DIR/apply-config.py" --list-presets
+    python3 "$APPLY_SCRIPT" --list-presets
 }
 
 main() {
@@ -123,7 +124,7 @@ main() {
     case "${1:-}" in
         "apply")
             echo -e "${YELLOW}🔄 Applying configuration overrides...${NC}"
-            python3 "$SCRIPT_DIR/apply-config.py" "${@:2}"
+            python3 "$APPLY_SCRIPT" "${@:2}"
             echo -e "\n${GREEN}✅ Configuration applied!${NC}"
             echo -e "${YELLOW}ℹ️  Restart your server to apply changes:${NC} docker compose restart"
             ;;
@@ -131,16 +132,16 @@ main() {
             if [[ -z "${2:-}" ]]; then
                 echo -e "${RED}❌ Please specify a preset name${NC}"
                 echo -e "Available presets:"
-                python3 "$SCRIPT_DIR/apply-config.py" --list-presets
+                python3 "$APPLY_SCRIPT" --list-presets
                 exit 1
             fi
             echo -e "${YELLOW}🎯 Applying preset: $2${NC}"
-            python3 "$SCRIPT_DIR/apply-config.py" --preset "$2" "${@:3}"
+            python3 "$APPLY_SCRIPT" --preset "$2" "${@:3}"
             echo -e "\n${GREEN}✅ Preset '$2' applied!${NC}"
             echo -e "${YELLOW}ℹ️  Restart your server to apply changes:${NC} docker compose restart"
             ;;
         "list")
-            python3 "$SCRIPT_DIR/apply-config.py" --list-presets
+            python3 "$APPLY_SCRIPT" --list-presets
             ;;
         "edit")
             edit_config
@@ -159,4 +160,4 @@ main() {
     esac
 }
 
-main "$@"
+main "$@"

scripts/bash/db-import-conditional.sh

@@ -2,6 +2,9 @@
 # azerothcore-rm
 set -e
 
+SCRIPT_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}" )" && pwd)"
+PROJECT_ROOT="$(cd "$SCRIPT_DIR/../.." && pwd)"
+
 print_help() {
   cat <<'EOF'
 Usage: db-import-conditional.sh [options]
@@ -91,9 +94,9 @@ echo "🔍 Checking for backups to restore..."
 BACKUP_SEARCH_PATHS=(
   "/backups"
   "/var/lib/mysql-persistent"
-  "$SCRIPT_DIR/../storage/backups"
+  "$PROJECT_ROOT/storage/backups"
-  "$SCRIPT_DIR/../manual-backups"
+  "$PROJECT_ROOT/manual-backups"
-  "$SCRIPT_DIR/../ImportBackup"
+  "$PROJECT_ROOT/storage/backups/ImportBackup"
 )
 
 backup_path=""

scripts/bash/deploy-tools.sh

@@ -4,7 +4,8 @@
 
 set -euo pipefail
 
-ROOT_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)/.."
+SCRIPT_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}" )" && pwd)"
+ROOT_DIR="$(cd "$SCRIPT_DIR/../.." && pwd)"
 DEFAULT_COMPOSE_FILE="$ROOT_DIR/docker-compose.yml"
 ENV_FILE="$ROOT_DIR/.env"
 TEMPLATE_FILE="$ROOT_DIR/.env.template"

scripts/bash/manage-modules-sql.sh

@@ -5,7 +5,9 @@ trap 'echo "    ❌ SQL helper error (line ${LINENO}): ${BASH_COMMAND}" >&2' ERR
 
 CUSTOM_SQL_ROOT="/tmp/scripts/sql/custom"
 ALT_CUSTOM_SQL_ROOT="/scripts/sql/custom"
-HELPER_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)"
+HELPER_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}" )" && pwd)"
+PROJECT_ROOT="$(cd "$HELPER_DIR/../.." && pwd)"
+MODULE_HELPER="${MODULE_HELPER:-$PROJECT_ROOT/scripts/python/modules.py}"
 
 SQL_SUCCESS_LOG=()
 SQL_FAILURE_LOG=()
@@ -116,7 +118,7 @@ ensure_module_metadata(){
 
   local -a module_py_candidates=(
     "${MODULE_HELPER:-}"
-    "${HELPER_DIR%/*}/modules.py"
+    "$PROJECT_ROOT/scripts/python/modules.py"
     "/tmp/scripts/python/modules.py"
     "/scripts/python/modules.py"
   )

scripts/bash/manage-modules.sh

@@ -6,8 +6,8 @@
 set -euo pipefail
 
 SCRIPT_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)"
-PROJECT_ROOT="$(dirname "$SCRIPT_DIR")"
+PROJECT_ROOT="$(cd "$SCRIPT_DIR/../.." && pwd)"
-MODULE_HELPER="$SCRIPT_DIR/modules.py"
+MODULE_HELPER="$PROJECT_ROOT/scripts/python/modules.py"
 DEFAULT_ENV_PATH="$PROJECT_ROOT/.env"
 ENV_PATH="${MODULES_ENV_PATH:-$DEFAULT_ENV_PATH}"
 TEMPLATE_FILE="$PROJECT_ROOT/.env.template"
@@ -65,11 +65,6 @@ resolve_manifest_path(){
     echo "$candidate"
     return
   fi
-  candidate="$SCRIPT_DIR/../config/module-manifest.json"
-  if [ -f "$candidate" ]; then
-    echo "$candidate"
-    return
-  fi
   candidate="/tmp/config/module-manifest.json"
   if [ -f "$candidate" ]; then
     echo "$candidate"
@@ -132,7 +127,7 @@ run_post_install_hooks(){
 
   IFS=',' read -r -a hooks <<< "$hooks_csv"
   local -a hook_search_paths=(
-    "$SCRIPT_DIR/hooks"
+    "$PROJECT_ROOT/scripts/hooks"
     "/tmp/scripts/hooks"
     "/scripts/hooks"
   )
@@ -466,7 +461,7 @@ load_sql_helper(){
   )
 
   if [ "${MODULES_LOCAL_RUN:-0}" = "1" ]; then
-    helper_paths+=("$SCRIPT_DIR/manage-modules-sql.sh")
+    helper_paths+=("$PROJECT_ROOT/scripts/bash/manage-modules-sql.sh")
   fi
 
   local helper_path=""

scripts/bash/migrate-stack.sh

@@ -6,7 +6,7 @@
 set -euo pipefail
 
 SCRIPT_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)"
-PROJECT_ROOT="$(dirname "$SCRIPT_DIR")"
+PROJECT_ROOT="$(cd "$SCRIPT_DIR/../.." && pwd)"
 ENV_FILE="$PROJECT_ROOT/.env"
 TEMPLATE_FILE="$PROJECT_ROOT/.env.template"
 source "$PROJECT_ROOT/scripts/bash/project_name.sh"

scripts/bash/rebuild-with-modules.sh

@@ -5,7 +5,7 @@
 set -e
 
 SCRIPT_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)"
-PROJECT_DIR="$(dirname "$SCRIPT_DIR")"
+PROJECT_DIR="$(cd "$SCRIPT_DIR/../.." && pwd)"
 ENV_FILE="$PROJECT_DIR/.env"
 TEMPLATE_FILE="$PROJECT_DIR/.env.template"
 source "$PROJECT_DIR/scripts/bash/project_name.sh"

scripts/bash/stage-modules.sh

@@ -61,8 +61,8 @@ sync_local_staging(){
   fi
 }
 
-SCRIPT_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)"
+SCRIPT_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}" )" && pwd)"
-PROJECT_DIR="$(dirname "$SCRIPT_DIR")"
+PROJECT_DIR="$(cd "$SCRIPT_DIR/../.." && pwd)"
 ENV_FILE="$PROJECT_DIR/.env"
 TEMPLATE_FILE="$PROJECT_DIR/.env.template"
 source "$PROJECT_DIR/scripts/bash/project_name.sh"
@@ -314,7 +314,7 @@ if [ "$TARGET_PROFILE" = "modules" ]; then
     show_staging_step "Source Rebuild" "Preparing custom build with modules"
     echo "🚀 Triggering source rebuild with modules..."
     if confirm "Proceed with source rebuild? (15-45 minutes)" n; then
-      "$SCRIPT_DIR/rebuild-with-modules.sh" ${ASSUME_YES:+--yes}
+      "$PROJECT_DIR/scripts/bash/rebuild-with-modules.sh" ${ASSUME_YES:+--yes}
     else
       echo "❌ Rebuild cancelled"
       exit 1

scripts/bash/start-containers.sh

@@ -6,14 +6,15 @@
 
 set -euo pipefail
 
-ROOT_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)"
+SCRIPT_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}" )" && pwd)"
+PROJECT_ROOT="$(cd "$SCRIPT_DIR/../.." && pwd)"
 
-PROFILE="$(python3 - <<'PY' "$ROOT_DIR"
+PROFILE="$(python3 - <<'PY' "$PROJECT_ROOT"
 import json, subprocess, sys
 from pathlib import Path
 
 root = Path(sys.argv[1])
-modules_py = root / "scripts" / "modules.py"
+modules_py = root / "scripts" / "python" / "modules.py"
 env_path = root / ".env"
 manifest_path = root / "config" / "module-manifest.json"
 
@@ -36,4 +37,4 @@ print(profile)
 PY
 )"
 
-exec "${ROOT_DIR}/deploy.sh" --profile "$PROFILE" --yes --no-watch
+exec "${PROJECT_ROOT}/deploy.sh" --profile "$PROFILE" --yes --no-watch

scripts/bash/stop-containers.sh

@@ -4,6 +4,7 @@
 
 set -euo pipefail
 
-SCRIPT_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)"
+SCRIPT_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}" )" && pwd)"
+PROJECT_ROOT="$(cd "$SCRIPT_DIR/../.." && pwd)"
 
-exec "${SCRIPT_DIR}/cleanup.sh" --soft --force
+exec "${PROJECT_ROOT}/cleanup.sh" --soft --force

scripts/python/check_module_staging.py

@@ -9,7 +9,7 @@ from pathlib import Path
 def load_module_state(root: Path) -> dict:
     env_path = root / ".env"
     manifest_path = root / "config" / "module-manifest.json"
-    modules_py = root / "scripts" / "modules.py"
+    modules_py = root / "scripts" / "python" / "modules.py"
 
     try:
         output = subprocess.check_output(